rs47975111 SNP Detail

Summary

• ID
  rs47975111
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31351633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGGTAGG TAGGTAGATA
  GATAGATAGA TAGATAGATG ATAGATAGAT AGATAGATAG ATAGATAGAT AGATAGATAG
  ATAGATAGAT AAATGAGATA TGTAGATAGG TGGGTAGGTG GGTAGATAGA TAGGTAAACA
  GACAGAATTT TTTTTCTGTC AGGCACATCT TGACAGATCA TAGCAGGGTG GACGAAATGG
  R
  CTCCAAGACC ACTGTTATCT TCCTATCTCA CCCAGGCACA CATATTTGAG GCTCACACTC
  CTATGTGATC TGAGTGGAAC TTAGTGGAAC TCTCAATACA AGCAGCCCAC CATGGTAACA
  TTGCTTGACC AGGACATTTT CAAGTCTACC AGCATCTCCT GCGGCCATGC TACTATGTAT
  CTCTGCTGTA AATGAGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60562197	NES16490543	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47975111					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562197	NES16490543	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31351633 () rs orientation: forward

Symbol	Name	Function Class
Rr334776	regulatory region 334776	1833 bp distal
Rr341223	regulatory region 341223	569 bp proximal