rs47975902 SNP Detail

Summary

• ID
  rs47975902
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85416650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAA AGGAAGAGAA AAGTTGGTAG
  G
  GAGGCGTCAG CATTAGTCGA AGGCC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145392109	ENSMUSSNP3697698	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss322751354	CHEV_8_87213920	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47975902					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85416650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20705	CpG island 20705	1985 bp distal
Cpgi20706	CpG island 20706	within coordinates
Rr666575	regulatory region 666575	1786 bp distal
Rr666576	regulatory region 666576	547 bp distal
Rr666577	regulatory region 666577	778 bp distal
Rr666578	regulatory region 666578	208 bp distal
Trmt1	tRNA methyltransferase 1	within coordinates
Tssr78430	transcription start site region 78430	718 bp downstream
Tssr78431	transcription start site region 78431	703 bp downstream