rs47976746 SNP Detail

Summary

• ID
  rs47976746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36499870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGCAGG GACACAATCA
  GAACTTGCCT TATTGATTTG CCCAAGGTGA TAGATTGCCA CATGTGGATT GTGGCGTTGC
  TGTGCATCTC AGGGTTACTA TTACTGTGGT GAAACACCAT GACCAAAAGG TACCTGGGGA
  GGAAAGGGTT CAAATGGCTT ATACTTCCAC ATCACAAATC ATCATCAAAG GAAGTCAGGA
  Y
  AGGAATTCAA GCCAGGCAGG AGCCTAGAGG CAGTTGCTGC TGCAGAAGCC ATGGAGGGAT
  GCTGCTTACT GGCTTGCTCC TCATGGCTTG CTCGGCCTGC TTTCCTATAG AACCCAGGAT
  CACCATGCAT GATGAGCAGG ACCCTCTTAC ATCAATCACT AATTAAGAAA ATGCCCTACA
  GCTGGATCTT TCAGGGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss148927329	ENSMUSSNP5261386	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs47976746					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36499870 () rs orientation: forward

Symbol	Name	Function Class
Gm33401	predicted gene, 33401	1189 bp upstream
Tssr6266	transcription start site region 6266	1207 bp upstream