rs47977113 SNP Detail

Summary

• ID
  rs47977113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127293940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACGGATA TATCTCCAGC
  TTTAACAAAA GAGAGCCGAG CTCCATGGTC CGTGCCTGGA GTCCCAGCAC GGTTAGACTG
  AGCCAAGAGC ATCCTTGCAC AGAGGGACTA GGGGACAAGC TGGTTACCAT GAGAAGACAC
  AAATGGTCCT GCAACCCAGA TGGACAAATC CTCAGAAATA TCACTAATTA TTGATGCTCT
  Y
  GGGTCCCAAA TTTGATCATC TGTAGATCTT ATTGATTTTT ACAGTTCAAT CATATCTGCA
  TTTTCTCTAT TCTTCTCATT CACACCACCA TCATGGCTCA ACATTCTAAT ACACACAGCA
  TAAAACCGGG CTGCATGTTC GCACCTGTGC ACTGCACAGC TTGAAACAGA TCTAGAAAGA
  GAAATGTCGT GTCTGGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135865140	ENSMUSSNP1331382	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320954702	CHEV_3_127203209	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47977113					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127293940 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	941 bp upstream
Cpgi13791	CpG island 13791	882 bp distal
Gm64355	predicted gene, 64355	1961 bp downstream
Rr584800	regulatory region 584800	800 bp distal
Tssr35576	transcription start site region 35576	1253 bp upstream
Tssr35577	transcription start site region 35577	1220 bp upstream
Tssr35578	transcription start site region 35578	1198 bp upstream
Tssr35579	transcription start site region 35579	1154 bp upstream