rs47977195 SNP Detail

Summary

• ID
  rs47977195
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7671682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGAAATT TGATTCTAAA
  TTCTGAAGTC CGATTCTTTA GCCTGCTATG TGTTCCACAT GGCTCTGGTT CTTGTAACCC
  CGCAGGATTC CTTCCTTTCA GTTCGCCTGC ACTCTGTTAA AGCTTCAGCA GCCCTCCTCC
  TCCCCCCACT TCCCCCCCCC CTCCTCCTCC TCTTCCTCCT GGTAACCTGG CTTTTCTCCT
  Y
  GCCAATGGGG CAAGGCTACA CTCACTCCCA TGTCCACCCT ATCCACTCTG CACAGTCCAG
  CCTGTCCTGT GAGGAGACCT CATTGCTCAT ACACTGAGCA CATCAGCCTC TCCCACACCC
  CTTAACTTAA TGGTCACTCC ATTTCCTCCA GTAACTACAG CTTCCTTAAA CCTATGCCTG
  GGCCACAGCG ACTCTTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134559866	ENSMUSSNP5690137	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47977195					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7671682 () rs orientation: forward

Symbol	Name	Function Class
Il7	interleukin 7	within coordinates
Rr81463	regulatory region 81463	682 bp distal
Tssr32539	transcription start site region 32539	103 bp upstream
Tssr32540	transcription start site region 32540	72 bp upstream