rs47977859 SNP Detail

Summary

• ID
  rs47977859
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91336464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGCTGAC TTAGCATTAG
  TTGCCTCTGC TCCTTCCTTC CTCCTAGCTA ATGAGATGGC TGTGCCCCTG TTTTAGTTGG
  TCATCCCAGT TGCTTGGGTA GCTAAAACTT GGCCCTTTAT GGCTTGATAC CACTGGCTCC
  TTGCATTTCA GCACTAGGGA GGGACAGAGT GAGGGATCCC CAGGGTTCTG CAGACCCAAG
  S
  GGCTGTTAGA GAGAGGAAGG TGCTTGCTTC TCCTCATCCA GGCATGGGTA TAACAGGTTT
  CTGGTCCTTC CCATCATTCC TTTGGGGAGT TGCTCCTACT GAGCCAACTA AGACACGGTT
  CTGGTCTGAA AAAGCTCAAA CACAGTGTTC TTTCTTCCTC TGCTGCACAA CGTATGTCCT
  TTCTCTTGCT TATGAGCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60908900	NES16221033	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47977859					SNP	C	C	C	C	C	C	C	C	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60908900	NES16221033	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91336464 () rs orientation: forward

Symbol	Name	Function Class
Gm67851	predicted gene, 67851	within coordinates
Rr634456	regulatory region 634456	within coordinates
Rr634457	regulatory region 634457	1540 bp proximal