rs47978228 SNP Detail

Summary

• ID
  rs47978228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:66381010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTAATT ATTCTGTAGT
  CCTGATGGGG ATTGGTTTAC TCAGATTTCT GAAGGCTATT CCCAGAGCCG TACCCCCAAT
  AACCAAACCA AGTCCCACCA CGCCACACCC CTTAGAGGTC CCACTGCCTG CCAACACTGC
  CTATCTCCAG GGCCTGGGTC TTTGGGTAGG ATCAAGGTCG AGCCACATTT AAATCACCGA
  R
  AGGCTGGAGA TAGGGATATA TATAATATAT ATATATAATA TAATATATAT ATATATTGCT
  TAGGTTGATG AAATGCAAGC CATTGGTGAA GCCATTTGGA TAGAAACTTT GCAAATGAGG
  GAAGGAACCA TGGGGATGTT TGGAAGAAAA AGAAGTCTAA AGCAGAGAGA CCTGCAAGTG
  AAGACTTTAC CACAAGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61174676	NES16683895	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47978228					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61174676	NES16683895	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:66381010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15907	CpG island 15907	250 bp distal