rs47978638 SNP Detail

Summary

• ID
  rs47978638
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130132180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATCACAT ATACACACAC
  AGACACATAC ACAAAATATC ACATACACAC ATATCACATA TACACATACA CAAAAAGAAA
  GAAAATCTTG AAGGCGTTGT GGTAATCGCT AAGAAATTGG CAAGTGGTTT GGATAGACTA
  ATGGATACTA AATAGGTGTC TGAGCAGTGG TCTGTGCAAG ACGGTCAAAA AAGACCACGA
  R
  GGTAGTACTG ATTGGTTAAG AATGGGGAAG GGGGGGGCGT ATTTTAGAAT TAAAAATCCT
  GCAAAATATG GCAAAAATGT TGGTACAAAA ATCCTAAGAT TTGTGAAATA GTTTTTAGTA
  TATGTTTTTA AATGGCCCAT GAGCTGACCA ATGATCAGTT AACATAGATC CAGTCTCTTG
  AAGTTTAGGC ACATAAAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61062490	NES16062320	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47978638					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61062490	NES16062320	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130132180 () rs orientation: forward

Symbol	Name	Function Class
Gm4275	predicted gene 4275	949 bp downstream
Gm57247	predicted gene, 57247	861 bp upstream
Gm72045	predicted gene, 72045	947 bp downstream
Rr153982	regulatory region 153982	180 bp distal
Rr153983	regulatory region 153983	221 bp proximal
Rr153984	regulatory region 153984	821 bp proximal
Rr169359	regulatory region 169359	1421 bp proximal
Rr381489	regulatory region 381489	within coordinates
Tssr69470	transcription start site region 69470	858 bp upstream