rs47978742 SNP Detail

Summary

• ID
  rs47978742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:21766567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGTTCAA AGAGCTTCTC
  GAGGTCAAGG TCAGACAGTG AGAAGAGGAA GATGGAAGCA GGGCAGGAAG ACCAAAAACT
  CAAGGTTATC CTCATTCATA GTGAGTCTGG GACAGACAAG TCAGTCTCAC AAAATGAAGA
  AGTACTTGCT AGCGGTTCCC CTATACAGTG ATCAAAGTGT CAAAGGATTG AGAGAAAGAA
  R
  GAAAAAAAGT CAAACGCTAG CAATCATGCC AATGGAATAT TGTTTTTCTT AGGCAGAAGT
  AGGTAGCCTG AAGTTCTGTA TTGTTTCTTT TTTTTTTTAA GATTTAATTT TATTATTTTA
  ATTGTCTGTG CGTGCACATA CCCCTGCATG TAGCTATGTA CACCTGAGTG CATGTGCTCA
  CTGAGGCCAG AGGTGTCGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss146950461	ENSMUSSNP2657573	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs47978742					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:21766567 () rs orientation: forward

Symbol	Name	Function Class
Sgk1	serum/glucocorticoid regulated kinase 1	within coordinates