rs47979359 SNP Detail

Summary

• ID
  rs47979359
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112685507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGT TCCTGAAAAC ACTGACTCTC
  G
  TCCGAATATA TGTGATGGGT TGTTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss138726367	ENSMUSSNP6659585	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss324170470	CHEV_12_113957284	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47979359					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112685507 () rs orientation: forward

Symbol	Name	Function Class
Gm46382	predicted gene, 46382	within coordinates
Gm59466	predicted gene, 59466	within coordinates
Rr473581	regulatory region 473581	1645 bp distal
Rr473582	regulatory region 473582	1734 bp distal
Rr473583	regulatory region 473583	1567 bp proximal
Tssr115398	transcription start site region 115398	164 bp upstream