rs47980766 SNP Detail

Summary

• ID
  rs47980766
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:34417610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAAAAAG TCAAGGAATT AAGATCACTC TTGACAGTTG
  TCTGTATTCT CCACACTCCC ACCAGTACAC AACAAAGCTC TGGAACCTTC CTGCTGGGTC
  T
  ATTTCTCAAA TAACGCCAGT TTTCCTAGCC AACAGTTAAC ACTTCCCAGA ATCACGTGCT
  GTTCCTACCT GACTGGGGGC ACAGGGTAAC AAGGCAAAT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss149088209	ENSMUSSNP46323	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322573957	CHEV_8_35038054	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47980766					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34417610 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530006C21Rik	RIKEN cDNA 9530006C21 gene			585 bp downstream
Cpgi20240	CpG island 20240			1521 bp proximal
Rbpms	RNA binding protein gene with multiple splicing			Intron
				Noncoding-Transcript-Variant
Rr661901	regulatory region 661901			within coordinates
Rr661902	regulatory region 661902			351 bp proximal
Tssr80880	transcription start site region 80880			108 bp upstream