rs47980785 SNP Detail

Summary

• ID
  rs47980785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54346150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA AGAACTAAAT GAAAGACACT
  Y
  ATCATCAATC AAAGGCAATT GAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss62394481	NES17237695	PERLEGEN	MM_PANEL2	f	SNP			C	C	C			T	C		C
ss139556104	ENSMUSSNP1119702	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C				C
ss324634877	CHEV_14_54728368	CHEVERUD	SCREENING_POP	f	SNP							C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs47980785					SNP	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62394481	NES17237695	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54346150 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
D14Mit259	DNA Segment, Chr 14 Massachusetts Institute of Technology 259	1132 bp proximal
Gm30275	predicted gene, 30275	within coordinates
Rr299389	regulatory region 299389	within coordinates
Rr299390	regulatory region 299390	1651 bp proximal
Rr389671	regulatory region 389671	within coordinates
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates