rs47980826 SNP Detail

Summary

• ID
  rs47980826
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121946941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA GATGGCTCAG CGGTTAAGAG
  S
  GCAGACTGCT CTTCCAAAGG TCCTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147409297	ENSMUSSNP2431372	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320487080	CHEV_2_121942196	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47980826					SNP	C	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121946941 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12168	CpG island 12168	1497 bp proximal
Rr55508	regulatory region 55508	859 bp proximal
Rr58060	regulatory region 58060	within coordinates
Rr373779	regulatory region 373779	936 bp upstream
Spg11	SPG11, spatacsin vesicle trafficking associated	within coordinates
Tssr19802	transcription start site region 19802	464 bp upstream
Tssr25950	transcription start site region 25950	1857 bp downstream
Tssr25951	transcription start site region 25951	1904 bp downstream