rs47980959 SNP Detail

Summary

• ID
  rs47980959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156038855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAC TGCGGGACCC TGGCTCACTC
  Y
  TGTTCCCCGA CTGGCCCCCG GATCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148068247	ENSMUSSNP161299	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320578150	CHEV_2_156022671	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47980959					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156038855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12545	CpG island 12545	within coordinates
Gm75148	predicted gene, 75148	218 bp upstream
Phf20	PHD finger protein 20	within coordinates
Rr374121	regulatory region 374121	1698 bp downstream
Rr397432	regulatory region 397432	176 bp downstream
Rr568209	regulatory region 568209	283 bp distal
Rr568210	regulatory region 568210	within coordinates
Tssr21145	transcription start site region 21145	160 bp downstream
Tssr27045	transcription start site region 27045	374 bp upstream