rs47981357 SNP Detail

Summary

• ID
  rs47981357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135159304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTGTTT TCATATTGAG
  GATTGAACCT GGCATCTCCA GCATGCCGGT CAAGGGCTTT ACCATTGAAC TACATCACTC
  TAGGCCAGGC TGAGCTTTGT GTAGGTTTTT GGAGCTGGGT GGCAGGTCTG GAGCTCTAAG
  TTATAGTATC TTCATGCCTG CCCACCCCCC CTTTGGACCC ACACTTCCTG TAACATCATG
  Y
  AGCATTGCTT CTCGTGGGTT AGTGAGCACT CCAAGGTTTT AAAACCTTAA AATATAGCAT
  GATTGAATAG TTAAAAAAAA AAAAATCAAA TCTGTGTTCC CCCAAAACAC TAAAAGCTCC
  TCTCTTGGAA ACTGGCTGCC AATGAAGCAA ATTGGAAAGC TGCAGTGAAG AGTAACAGGA
  TACTGATTTC ATCTTTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147546852	ENSMUSSNP6893787	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47981357					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135159304 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15072	CpG island 15072	1178 bp proximal
Gm15979	predicted gene 15979	1152 bp upstream
Gm69862	predicted gene, 69862	1936 bp upstream
Rcan3	regulator of calcineurin 3	within coordinates
Tssr43991	transcription start site region 43991	1751 bp downstream