rs47981850 SNP Detail

Summary

• ID
  rs47981850
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45018897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTCATCA GTCTTCGGTA
  GTTCCACGAC CCTGGGATGT GCGTGGCCCT CACTGGCCGT GAAAGCAGCC ACTGTGGCCT
  GGAAGAGAGA AGACGCCTCA ATGAGAGAGA CCCTCTTTGA GACATGGGCA CTCCAGCCAG
  CGTAGCCGCA AAGATCAAGT AGGGGAACCC TGACACAGCT CAACAGGAGG CTACCCTATA
  S
  TGACTCCGAC CTGTGAGAAC CCTTGCTTTC TTCCGAAAGT CAGGGAGAAG GGCATCCTTA
  GTACTTAACA CCTGCCAATC TTGTTCTCAG ACAAATGGAA ACAAGTGCCC CCCCCACCTC
  GGGGGTGGGG TGGGGTGATA GGGATCAGGT GTAAATCTTG AGTCTGCAGG CAGTAATAAG
  TAATAAGCAC TGCAGTTTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61003683	NES16117392	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47981850					SNP	C	C	C	C	C	C	G	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003683	NES16117392	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45018897 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	1601 bp distal
Cpgi19050	CpG island 19050	372 bp proximal
Gm45619	predicted gene 45619	769 bp downstream
Gm71276	predicted gene, 71276	1741 bp downstream
Lin7b	lin-7 homolog B, crumbs cell polarity complex component	within coordinates
Mtag2	metastasis associated gene 2	1525 bp downstream
Rr400311	regulatory region 400311	1054 bp upstream
Rr646422	regulatory region 646422	1286 bp distal
Rr646423	regulatory region 646423	1100 bp proximal
Rr646424	regulatory region 646424	1158 bp proximal
Rr646425	regulatory region 646425	1227 bp proximal
Tssr72377	transcription start site region 72377	1086 bp downstream