rs47981961 SNP Detail

Summary

• ID
  rs47981961
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137191417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT TGGATTTGAA CGCAGAACAC
  A
  GTCTCTTTAC ACTGTGTGTG CCATC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144526872	ENSMUSSNP4526596	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47981961					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137191417 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1697	transcription start site region 1697	1777 bp upstream
Tssr49319	transcription start site region 49319	1613 bp downstream
Tssr49320	transcription start site region 49320	1601 bp downstream
Tssr53954	transcription start site region 53954	1683 bp upstream
Tssr53955	transcription start site region 53955	1667 bp upstream
Tssr53956	transcription start site region 53956	1648 bp upstream
Tssr53957	transcription start site region 53957	1631 bp upstream
Tssr53958	transcription start site region 53958	1576 bp upstream
Tssr53959	transcription start site region 53959	1563 bp upstream
Tssr53960	transcription start site region 53960	1497 bp upstream
Tssr53961	transcription start site region 53961	1398 bp upstream
Tssr53962	transcription start site region 53962	1380 bp upstream
Tssr53963	transcription start site region 53963	1341 bp upstream
Tssr53964	transcription start site region 53964	1301 bp upstream
Tssr53965	transcription start site region 53965	1276 bp upstream
Tssr53966	transcription start site region 53966	407 bp upstream
Tssr53967	transcription start site region 53967	374 bp upstream