rs47982028 SNP Detail

Summary

• ID
  rs47982028
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105248062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAATATATG ATTTTAACAT CTGTTGTTTG AGTTGCAGAG
  TGGAATTTCA TTAAAAGACG TTGTGAGAAT TTTGGCCTTG GTACTACAAG AGTTTCTAAC
  M
  ATTTGTATAC CGGCATTAAA CATATTTCTG TCATTCTGTG CTCAGTGGTT ATATAGAGTT
  CTTAACATTG ACAATCAAAC AAATCTGAAA AACACTGAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147499380	ENSMUSSNP3655294	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
ss323448207	CHEV_10_104849257	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47982028					SNP	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105248062 () rs orientation: forward

Symbol	Name	Function Class
Gm66627	predicted gene, 66627	1094 bp upstream
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates