rs47982098 SNP Detail

Summary

• ID
  rs47982098
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88277260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACCCTGA ATCAAAATTA
  GGGTTTTTCT GGGGTCTCCT TTCCTCTCTA TCCTTTTTTC TCTTTCATCT AGTGTTATGG
  GGCTGAAAGG GTGGAATGAA AGGAGGTGAG AAGCCAATTT TGAATTATCC ACTGTTAAGG
  CCCAGGTAAC TGCTACCTGT CTAGCCTGCT ATTTCATGCT GTTACTAATG TCAGAAGGAA
  R
  CTTTCTCATA TGCTGTTATT GCTGCTACTA GGATGTTTTG GCCCTTAGTA GTTTTTGGAA
  ACCAGTCACA ACAGAGGTCA GTTAGAGCTG CTTTGTACAT TTAGCCACAA AAAGCTTGGA
  CCCGAACCAA CTTCCAGACA GCACTTCCTG TACCTGTATA TGAGCTTTTA TGGTCTTTGC
  CTTTCTAAGC TGCCCCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60289483	NES15799998	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G	G	G	G		G	G	G	G		G
ss325500515	CHEV_17_88369172	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47982098					SNP	A	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60289483	NES15799998	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88277260 () rs orientation: forward

Symbol	Name	Function Class
Gm50041	predicted gene, 50041	612 bp upstream
Rr333904	regulatory region 333904	860 bp distal
Rr343663	regulatory region 343663	261 bp distal