rs47982118 SNP Detail

Summary

• ID
  rs47982118
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99510842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTATTCT GTTGCTGAGA
  AGAGACCCCA TGACCAAGGT AACTCTTATG AAAAAGAAAA GTACTTAACT GGAGGCTTGC
  TTACAGTATC AGAGGCTTAG TCCATTTATC ATAATTGCAG GGAGTATGGT AGCAGGCAGG
  CCTGGTGTTG GAGAAATAGT TAAGAGTTAC ATCCTGACCC ACCTGACCCG TAAGGGTGGG
  C
  GAAGACTGGG TCTGACATGG GCGTTTTGAA ACCTCAAAGC CCACCTCCAG TGTCACACTT
  TCTCCAACAA GGCTATACCT CCTAATCCTT GTAATATTTT CAAATAGTGC TGAATCATGG
  CAAACCATTT TGTTTCCCAC AGTGGCAGTA CCATTTTGAA TTCCCATCAA TAACGCACAG
  AAATTTGAGT TTCTCCCCAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136849324	ENSMUSSNP3471319	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47982118					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99510842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22198	CpG island 22198	760 bp proximal
Dzip1l	DAZ interacting protein 1-like	707 bp upstream
Gm68333	predicted gene, 68333	within coordinates
Rr206941	regulatory region 206941	158 bp proximal
Tssr86687	transcription start site region 86687	742 bp upstream
Tssr86688	transcription start site region 86688	1034 bp upstream
Tssr86689	transcription start site region 86689	1066 bp upstream