rs47982454 SNP Detail

Summary

• ID
  rs47982454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:147166865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTC ACAAAGCAAC CATTCTGCTG
  Y
  GTTTCCTGAG ACTTGCTTAA CGTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322086697	CHEV_6_147213889	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47982454					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:147166865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18178	CpG island 18178	815 bp distal
D6Mit26	DNA segment, Chr 6, Massachusetts Institute of Technology 26	496 bp distal
Pthlh	parathyroid hormone-like peptide	1354 bp upstream
Rr145960	regulatory region 145960	864 bp distal
Tssr59618	transcription start site region 59618	1264 bp downstream
Tssr64140	transcription start site region 64140	1493 bp upstream
Tssr64141	transcription start site region 64141	1427 bp upstream
Tssr64142	transcription start site region 64142	1390 bp upstream
Tssr64143	transcription start site region 64143	1339 bp upstream
Tssr64144	transcription start site region 64144	1215 bp upstream