rs47982500 SNP Detail

Summary

• ID
  rs47982500
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135282126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT CGGTGTGAGC CACTGTGTCT
  K
  GCCTACAGAC TGTCTGGCCT TCATC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145531774	ENSMUSSNP4771224	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss319989362	CHEV_1_137250965	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47982500					SNP	T	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135282126 () rs orientation: forward

Symbol	Name	Function Class
Gm56137	predicted gene, 56137	566 bp upstream
Lmod1	leiomodin 1 (smooth muscle)	within coordinates