rs47982827 SNP Detail

Summary

• ID
  rs47982827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48916928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTGCACC CCTGCAATCC
  AGAGGCTGAG GCAGGGGCAT CATGAGTTCC AGGTGAGTTT GGGCTAATAG TGAATTCCAG
  GTCATCCTGA GCTGGACAGT GAGATCCTGT CTCAAAACTA GTAACGGCCA ACAGCATGCT
  TGGGATGTAG CTCAGTGGTA GGTTGCTATG TATCTCAGCA TTCTCCAGGC TATGGATTCA
  R
  TCCCCAGACA GACAAAAGCA ACTCCTGTCT CCCACAATAA GAATTCCCTG GCTTCAGGAC
  AAAGAGGTAA CTGGTCCCCC AGGCTTATCA CCTCAAAGCT GCAGCCTCCT TGTCCTCCGG
  GGCTGAGATC TTTTTTTTTT CCCCTCCCAG GTAAGCACCA GGAATGATAA CTAGCAACAT
  GCTAAAGAAT TTTCTTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145720316	ENSMUSSNP6460678	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47982827					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48916928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9295	CpG island 9295	1162 bp proximal
Gm64620	predicted gene, 64620	1589 bp upstream