rs47982993 SNP Detail

Summary

• ID
  rs47982993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20413379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTTTATTA CAGCAAAGCA ACTTAAGAGG GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GATCTCATGC CCTCTATTAC TCTAATCCAC
  Y
  GTAAAAGTGC ACTCAGAACT GAGCATCCTT AACAGTTATT CTATTTTTCT CCAGTAAGAG
  AAATGCCAAG ATTTCAGGCT GTGGACTGTG TTCCAGTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63231314	NES17473164	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	C	C	C	T	T	T	T	T	T
ss146173068	ENSMUSSNP5949822	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47982993					SNP	C	T	T	T	T	C	C	C	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63231314	NES17473164	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20413379 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	within coordinates
Gm32689	predicted gene, 32689	760 bp upstream
Gm41816	predicted gene, 41816	1739 bp upstream
Rr356916	regulatory region 356916	979 bp distal
Rr356917	regulatory region 356917	1022 bp proximal
Rr361508	regulatory region 361508	1035 bp proximal
Rr364130	regulatory region 364130	1109 bp distal