rs47982996 SNP Detail

Summary

• ID
  rs47982996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:87471182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATGGTTA ATTTATGGAA
  CCCACTTTTG GAAAATCTTC CTCTACCAGT CAGTCACCAG TCACAAACTT ATCCCAAAGG
  TAAACACATT TCCCACCACG TGAGCGCTCC GCTCCGAGAC AGTTACTATG CCATCTCATT
  TGTCACAGCA GGCTTTGCTC TTCAGCAGCT TCTGAAGGAG ACGGTGACAC CACAGGTAAC
  R
  ACACTAATTA AAGGGAGTCA CTGTCCTACT TTTCCAAGTT AGGTAATTGA AGTCCTTGAA
  AGTGAACTGA TCCATAAACT AAACCTGCTT AAAGGAAACT TCAGTGACTT TCCAAATTCC
  ACCACGCATT CACATCCCTT ATCGCTCAAA TCCCCAAATT CCATCATCTC ACAAAGCATA
  GCATTCTGTC CTCTAAACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145430761	ENSMUSSNP5666933	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47982996					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:87471182 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20765	CpG island 20765	517 bp proximal
Gm10638	predicted gene 10638	1145 bp upstream
Gm63869	predicted gene, 63869	within coordinates
Rr666882	regulatory region 666882	within coordinates
Rr666883	regulatory region 666883	855 bp proximal
Rr666884	regulatory region 666884	910 bp proximal
Rr666885	regulatory region 666885	1370 bp proximal
Siah1a	siah E3 ubiquitin protein ligase 1A	within coordinates
Tssr78572	transcription start site region 78572	893 bp upstream
Tssr78573	transcription start site region 78573	946 bp upstream
Tssr78574	transcription start site region 78574	982 bp upstream
Tssr78575	transcription start site region 78575	1036 bp upstream
Tssr78576	transcription start site region 78576	1048 bp upstream
Tssr78577	transcription start site region 78577	1101 bp upstream
Tssr78578	transcription start site region 78578	1125 bp upstream
Tssr82293	transcription start site region 82293	1396 bp downstream
Tssr82294	transcription start site region 82294	1539 bp downstream