rs47984880 SNP Detail

Summary

• ID
  rs47984880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165482492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTTCTGGG AGCTAGTTGA AACAGACAGG TAGCGAGCAG
  TTAAGACAGA AGGCCAGGAA GTGTTCCACC TCCCTAGTCA GAGGCAACCT GAGACATTGC
  Y
  TGGGTCTGGG TGGATATCAC GCAGAGCCTC CTCCTGGGCT TGGAAGTGTC CCTGATGTCC
  TACCCTTCTC TCTACACACA GACTCTTTCT CTTCAGGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146004324	ENSMUSSNP1292071	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47984880					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165482492 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr372388	regulatory region 372388	1409 bp upstream
Rr422410	regulatory region 422410	863 bp distal
Rr422411	regulatory region 422411	1106 bp distal
Rr422412	regulatory region 422412	465 bp proximal
Tssr9810	transcription start site region 9810	1037 bp downstream
Tssr9811	transcription start site region 9811	347 bp upstream
Tssr9812	transcription start site region 9812	587 bp upstream