rs47985448 SNP Detail

Summary

• ID
  rs47985448
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28663130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAGCAGC ATATGCTGCC
  TGCAATACGA GCACTCAGGA GGTGGAGGCA GGAGGATCAG GGGTGAGCAT TAACCTTAGC
  TACACAAGAC CCTCTCTAAA CCCATACAAG CAAAACTGTA AGACTTCAAC AGGCTGTATT
  CATAGGTAAA CATACACACA CACACACACA CACACACACA CACACACGCC CAAGTGTATG
  R
  ATGCACACAC ATGTAACAAT AATCAACAAA TAAGAAGGCA CAAATTTGAG AAGGGGATAT
  GGGAGGAATT AAAGGAGAAA TGATGTAAAA TCAGTATTCA TATATTAAAT TCTCAAAAGA
  TAAATAAATT AAAAATAAAG ATGAAGAAAA GAACAACTTG GCTTGCTATT CATGTAAGTC
  TTAACTCCCT TCAACCCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60561177	NES16570499	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47985448					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60561177	NES16570499	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28663130 () rs orientation: forward

Symbol	Name	Function Class
Fkbp5	FK506 binding protein 5	within coordinates
Gm22146	predicted gene, 22146	1839 bp upstream