rs47985820 SNP Detail

Summary

• ID
  rs47985820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44022506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATTCATC TATTTAATTG
  AACAACCACT TGTTATTTCC TTTTTCTGAG TGAGGATATT ATGACACAAA ATGGTTAGTA
  ACTTGCCAGG ATGACATAAC TGAGTGTCAC ACTTACACAG GAATTCAAAC TTAGAGAATC
  AAGGCCCTGA ATAAACTCTT TGCAAAACAG AACATCAATT AATATGGACA AATGTCTGTA
  Y
  TCGCTAAGGT CTGCTTAGGC TACTCTGGCC ACAGCTACCA CAACCCTCAG GGCACACTGC
  TGGCCTATGA TGAAGGTGAT AATGTGTGAC ACTGGTCATG CTTTGACCCC ATTATGCAGT
  AAGTATTTCT ATGAAAATAA CACAAGATTA GCATGCTTGC CAAGGTCAAG GTGGAAAGAT
  TTTATGAGTG AATTGCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52252479	NES15252657	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47985820					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52252479	NES15252657	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44022506 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1509	CpG island 1509	1947 bp proximal
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
D10Mit38	DNA segment, Chr 10, Massachusetts Institute of Technology 38	425 bp distal
Gm67081	predicted gene, 67081	1548 bp upstream