rs47985861 SNP Detail

Summary

• ID
  rs47985861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60057102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTACAGAG GTGTGGGAAT
  CTCAACTCTT ACATTGCTAT GGCCCATGAT AATTTATGAA GCACCATCAG AGGCTTCTGG
  CATGATCTTT TTCTGTGGGT ATCTGGGATA GTTCTATTTT GTTGCTGATA AAGCCCCCTG
  CCCTAATTTG CTGGTGATAG TTAGGAGGTG TCAGAGTATA AACACAATCA ACTAGAGAAG
  R
  CAGAGTTATA AAGTCTGTGC TTGCCATTAC TTTAAAAGTT TGAAAAGTAA AAGACCTGAT
  GAAAGTTAAC CACAAAATAA TGCAATTGAT GGGGAAATAT GTCTGACACT TACAGTCAAT
  TCAAAAGGTT TAGGCTAAAT ATACATGCAT GGAAAGATTA ATTCTATTTT TCAAAGAAGA
  GTGCATATGG CATCTAACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147991206	ENSMUSSNP1570003	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47985861					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60057102 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	1564 bp upstream
Tssr4605	transcription start site region 4605	1951 bp downstream
Tssr134460	transcription start site region 134460	1633 bp downstream
Tssr134461	transcription start site region 134461	1774 bp downstream
Tssr134462	transcription start site region 134462	1861 bp downstream
Tssr134463	transcription start site region 134463	1921 bp downstream