rs47985911 SNP Detail

Summary

• ID
  rs47985911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84823214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGTCAGCA GCAGTACCCC
  ACTGCTCCCC TTTCTTGGTA TTAAGTGCAA TTAAAGCTGT GGGTGTTGCA CCTTCTCCAG
  AGCTGGGTTC TCTTGGCCCC GCAGCCCAGA GAGGGGCATA TTGTGAAGGG CCCCGGCCTC
  CAGCTTCCAA AGAGGAGCAT CTGGCTGGCT GCAGGGCCAG GTGCTCCAGA CCCGAGGCCT
  Y
  GCCCTGCGCC TTCCACCCCA TCAGCTTGTG ACCGAAACCT GCTCCCAGAG ATGCTTCTCC
  TCTGTGCAGT GCCCCTGACC CCCGTAACTA TTGTGATTAG TGAGTGCCGC TTGAGCGGAG
  TCAGTAACTT GTTGGGTTTT TTTCCAACCA TCATGGCCTT ATCCGTCCCC GATTTCTCAG
  TGTCTTCAAT CTGTGATAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60642567	NES16272403	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47985911					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60642567	NES16272403	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84823214 () rs orientation: forward

Symbol	Name	Function Class
Dcaf15	DDB1 and CUL4 associated factor 15	487 bp downstream
Gm39210	predicted gene, 39210	1455 bp upstream
Rfx1	regulatory factor X, 1 (influences HLA class II expression)	within coordinates