rs47986399 SNP Detail

Summary

• ID
  rs47986399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8820170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTCCAA ATCATAGCCA
  CAGCACCGCG TACCTCCCCT ACCGTTTCTC TAACCCTTTT AATTACCTGT CACCCTTATT
  CCTGACTTCT GGGGTTCCAC TGTACCAAGG AAGGTGGAAG CCCACTCAAG CAGAAGCTTG
  TTAACTTCAC GTATTTCTAG TGACATGTCT TCCCGAGTCC CGGTCACCAT ACCAAACACT
  R
  CCCACTCTTG CTCAGAGACA GCAAATGGAG AGAGTTCTAG TGTCAAAACG GTACATACGG
  AGTCTCAGCA ACTGTGCATC CTGTAGCCTG ACTTTCAGAG CTTTGTGCTT TTCTATTTCC
  TTTTAATTTT ATTCCTTGGA CACACACACA CACACACACA CACACACACA CACACACACA
  CCATACATAA TACATATATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52141457	NES15242056	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47986399					SNP	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52141457	NES15242056	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8820170 () rs orientation: forward

Symbol	Name	Function Class
Gm48727	predicted gene, 48727	within coordinates
Gm67475	predicted gene, 67475	121 bp downstream
Rr427431	regulatory region 427431	546 bp proximal
Rr427432	regulatory region 427432	1429 bp proximal
Tssr96665	transcription start site region 96665	809 bp downstream
Tssr96666	transcription start site region 96666	855 bp downstream