rs47987063 SNP Detail

Summary

• ID
  rs47987063
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40247636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGCATC TGTTCCCTTC
  CAGGTGCATT TTAAATAGTT TCCCCCATCT ATGTTCAATA ATTTCTGGTT CTTAAGAGAG
  TGGGCCCTGA ACTATAGGAC TCACGCTTCA TATTTTGTGA GGTTTATTTT TCTGTTTACT
  ATCTTCCATT TTCCACATAC ATGTATTGGT TCTCTTACAG ACTTGGAAAA CAGTTGTTAG
  W
  TTCAGTTCAT ATGAGTGCAC ACTTCTGTGG TCTGTTTCCC AGTAGTCGAG GAGCATACGT
  GTTTTCCTGT TTTTGAAGTG TATGTAGTAA AAGTCAAGCA CTCAAGCTCA GTTAGCATTT
  GAGTTTTAAT TTTGTTTTTC ATAATTGGTT GCAAAATATA TGATGACCTG TGATACTTTA
  TTGATTTTCT TGTTGTCTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52244064	NES15264539	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47987063					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52244064	NES15264539	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40247636 () rs orientation: forward

Symbol	Name	Function Class
Cdk19	cyclin dependent kinase 19	within coordinates
Rr214651	regulatory region 214651	1036 bp distal
Rr214652	regulatory region 214652	1765 bp proximal
Rr222642	regulatory region 222642	1765 bp distal
Rr384549	regulatory region 384549	within coordinates