rs47987178 SNP Detail

Summary

• ID
  rs47987178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:122529151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAGAGGG TATGAGGGAC
  AGTCCGGCTG GGAAAGCAAG CTGCTAACAA TACAGAAAGA ACGCTAGCCT TTTCCTCAAC
  ATCTGAAATA AATGACTAGC CTTTGAGGAT GGTGGACTCT GGGAGGATGT GTTTGGGGGA
  TGGGGAGGAG AAACGGCAGC TTTATCACTC CTTAGGACAG TATTCCTCCA TAATGCTGCG
  R
  GTGGAGCAGA GCCAGAGGCG GATTAGATGG CCTCCTGCCA CCTCCCCATG CTCTTATTAA
  TGGGTGGAAG CTGCTGAGGG CCAGGCTGCT CCGTTGCTAG AACCAGGTGC CCAGAGCAAG
  CGCGGCTGGT AATTCAGAGC GGCCACGAAT AGGAGAAGAG TAGATTTGGC AAGCCGGACT
  GTGGCAGCTG CTGTGTACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52249012	NES15337117	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47987178					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52249012	NES15337117	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:122529151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2304	CpG island 2304	244 bp proximal
Ppm1h	protein phosphatase 1H (PP2C domain containing)	within coordinates
Rr213323	regulatory region 213323	1850 bp proximal
Rr226290	regulatory region 226290	within coordinates