rs47987963 SNP Detail

Summary

• ID
  rs47987963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTTTCAG GTTATGGCAA
  GACCATCAGA CAATGCTGTG GACTTTTAGC AATGGGAACA AGTCATTTTA CTTATGTCCC
  AGTAATACAT ACATGTGCAG TCCTTCTGAT GCCTGATAGA TATTTTCTTA TGTTGGATTT
  TGGTTGTTAT TACATTCACT CTTGTTCTTC TTCATGCATG TAAGCCATGT CCCTTGTATT
  Y
  CCTTGCACTT AGTCCAGAGG ACTTATTTCT GGCATCTCAC AAATCCAAGG CATACTGTAG
  AAACAGGGTA TATCATTCCA GTTCTTCCTG GAGTTTGAAG AGTCCCTTAT GGTGGCACAG
  TCCTCCACCA AAACTATATT GTTGGGCTCC CCAGCATCCC AGAAGCTGTG AAGGAAAAAC
  ACAGGAGATC TTAAATATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936898	NES16189358	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47987963					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936898	NES16189358	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260490 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	751 bp downstream
Tssr58809	transcription start site region 58809	114 bp downstream
Tssr58810	transcription start site region 58810	89 bp downstream
Tssr58811	transcription start site region 58811	within coordinates
Tssr63019	transcription start site region 63019	1959 bp upstream
Tssr63020	transcription start site region 63020	1027 bp upstream
Tssr63021	transcription start site region 63021	949 bp upstream
Tssr63022	transcription start site region 63022	910 bp upstream
Tssr63023	transcription start site region 63023	855 bp upstream
Tssr63024	transcription start site region 63024	757 bp upstream
Tssr63025	transcription start site region 63025	725 bp upstream
Tssr63026	transcription start site region 63026	704 bp upstream
Tssr63027	transcription start site region 63027	666 bp upstream
Tssr63028	transcription start site region 63028	641 bp upstream
Tssr63029	transcription start site region 63029	613 bp upstream
Tssr63030	transcription start site region 63030	557 bp upstream
Tssr63031	transcription start site region 63031	527 bp upstream
Tssr63032	transcription start site region 63032	496 bp upstream
Tssr63033	transcription start site region 63033	482 bp upstream
Tssr63034	transcription start site region 63034	456 bp upstream
Tssr63035	transcription start site region 63035	441 bp upstream
Tssr63036	transcription start site region 63036	374 bp upstream
Tssr63037	transcription start site region 63037	341 bp upstream
Tssr63038	transcription start site region 63038	316 bp upstream
Tssr63039	transcription start site region 63039	248 bp upstream
Tssr63040	transcription start site region 63040	204 bp upstream
Tssr63041	transcription start site region 63041	157 bp upstream
Tssr63042	transcription start site region 63042	137 bp upstream
Tssr63043	transcription start site region 63043	120 bp upstream
Tssr63044	transcription start site region 63044	85 bp upstream
Tssr63045	transcription start site region 63045	5 bp upstream
Tssr63046	transcription start site region 63046	1 bp downstream
Tssr63047	transcription start site region 63047	24 bp downstream
Tssr63048	transcription start site region 63048	52 bp downstream
Tssr63049	transcription start site region 63049	67 bp downstream
Tssr63050	transcription start site region 63050	91 bp downstream
Tssr63051	transcription start site region 63051	143 bp downstream
Tssr63052	transcription start site region 63052	1656 bp downstream
Tssr63053	transcription start site region 63053	1766 bp downstream
Tssr63054	transcription start site region 63054	1933 bp downstream
Tssr63055	transcription start site region 63055	1960 bp downstream