rs47988633 SNP Detail

Summary

• ID
  rs47988633
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:139519757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGAGAG CGAGATGCAC
  AGGCAGGGTG AGAACACTGC AGTTACAGGG GCGGGAAGTC CAGCTGCATT TATCTGTACC
  TTGTGAACAC ACACAAGAAT CCGAGGTACC ACAGCAGACT AAGCCAGAGG GCAACATCCA
  GGGAGAACAC TGTTGAGATC CAGTGATCAT AGCAGGAAGT TAACATCTCA GGAGAGAAGG
  R
  CTGAGAGTTT TCCTCTCCTT GCTTTTTGTC TAAGACGTTT TATTTTATTT TATTTCCCGA
  AAAAAAAAAA AAAAAAAACA GTCCAGGGCA AAGTACAGTG TCAAAGATCA AGTGCAGTAT
  TCCAGGAAAA TATCAATTCA GACAAAAGCT GTGATGCTAT TGATTTTAAA CTGACTAAAA
  GTAGATTCTT ACAAAAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss61086371	NES16598863	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs47988633					SNP	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61086371	NES16598863	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:139519757 () rs orientation: forward

Symbol	Name	Function Class
Gm43678	predicted gene 43678	1232 bp upstream
Rr74613	regulatory region 74613	1097 bp distal