rs47989124 SNP Detail

Summary

• ID
  rs47989124
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164267135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTTGACAG TAAGCTGCTG AAATAATAAG ACACGTCAGG
  AAGGCAAATG CGTGATCCAC CTTGTCAATC TGAGACAACT TAGATCTGTT TGAAGTGAGC
  R
  CTACAAACGA GCTGTGGCAC AGCCTACTAC TGTAGCTAAC ACAGCGCCAG CCTACTGTAA
  ACCTGACTAG GGACAATGAG AAGCTAACTG GGTGCCTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145978627	ENSMUSSNP106420	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47989124					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164267135 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Tssr9784	transcription start site region 9784	1059 bp downstream
Tssr14732	transcription start site region 14732	1806 bp upstream
Tssr14733	transcription start site region 14733	1707 bp upstream
Tssr14734	transcription start site region 14734	1662 bp upstream
Tssr14735	transcription start site region 14735	1608 bp upstream
Tssr14736	transcription start site region 14736	1567 bp upstream
Tssr14737	transcription start site region 14737	1507 bp upstream
Tssr14738	transcription start site region 14738	1371 bp upstream
Tssr14739	transcription start site region 14739	1187 bp upstream
Tssr14740	transcription start site region 14740	1146 bp upstream
Tssr14741	transcription start site region 14741	1069 bp upstream
Tssr14742	transcription start site region 14742	1027 bp upstream
Tssr14743	transcription start site region 14743	1992 bp downstream