rs47989391 SNP Detail

Summary

• ID
  rs47989391
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109530695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGCCTT GTCTCAACAT
  TCATGCCAGA AGATTGGAAG GGGTACCATG GGTTACTGTG GGTCAGTGGG ACCTTGGAAG
  GAACAAGGGC TTGGGTAGGT GACTTTGCCA TGTCACCTTG GGATCTAGTT GTTTTGAGTC
  TTTGACTCTT AATCTGATCT TGAATAACAA ATGTCTCTAG TTCTGGGGTT CTGAGAGTCT
  R
  TGGTAGGATT CCCTAGGATT CGTGTGGGGA GGGCGGTCTG CATGTGCTCC CAAGTTGGTG
  TCCCAGCCCT TCTGCCTGCT CAGGGCTGTC TTAGACATAT TTGCTTTTCC TTTCAACATC
  ATAAAAGAAG GCAAATTTTG TCTTTTGATT GACACTCATA TGCAAACCAC AACATCCTTT
  CTCTGATAAT ACTGGGACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61717768	NES17649396	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47989391					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61717768	NES17649396	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109530695 () rs orientation: forward

Symbol	Name	Function Class
Meg3	maternally expressed 3	within coordinates
Mir770	microRNA 770	476 bp downstream
Tssr115120	transcription start site region 115120	403 bp upstream
Tssr115121	transcription start site region 115121	438 bp upstream
Tssr115122	transcription start site region 115122	633 bp upstream
Tssr115123	transcription start site region 115123	1666 bp upstream