rs47989399 SNP Detail

Summary

• ID
  rs47989399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:109758313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGTGATC CAATTGCTGT
  CCTTGGGAGT GGCTGTTGTA AGATTTCAAA CTGTCTCAGA CTATGCCAGA GAACTGGCTA
  TACTTCAAGA CCTGAAAGTT GGGGGTACCA CTGTCAGGAG AGGCTCCAGG CACTTACTTA
  CAAGGGAGGA TCTTTGAACA TCTGATCAGT CTGGGCTAGG CCCAGAGCTT AGCTATGGTG
  Y
  TAGCCAACCC AGGGTGAATC TCCTCTCCTC ATCAGTCTGA GCCTGTTCTC TTTATAGCTT
  GCTGACTCTA AATTTTTAAT ATGAAAAGAC AGTATTTAAC TGTGGCGTTG TGTATAATTT
  TCAGTATTCA ATTCTTTGTC TTGTGAAATG GGTAAAAACT TTTATGAGAG AAAAAAAGAG
  CAAATGTCAG AAATCATAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62018222	NES17135688	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47989399					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62018222	NES17135688	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:109758313 () rs orientation: forward

Symbol	Name	Function Class
Pde4d	phosphodiesterase 4D, cAMP specific	within coordinates