rs47989462 SNP Detail

Summary

• ID
  rs47989462
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33190781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACAACGC CGTTCCTTCT
  CCGGTCCGTG TAGCCCATCA TGAGCCTTAG AGAGCCTGGA CAGTCCCAGT GCCACCTCTC
  GGCTATTTTC CAGGCAGGTT GTATTAAGAA ATCTACAATG CCTGTGATGT GAATAGCAGA
  AAGAAGAGGT GCAGTTGTAC AGTGCATTGC GGCAGCACTG GCCAGGCGTT TGATATCTAG
  R
  GGGTGGGGGA AAACAATGGG AAGGAGCTTC CCTGATGGAC TCAATTTCAT AATCCATGAA
  CTGGCAATAT GAGCTGTCTG TAGTATTCTG CCTAAGCACC AAGCAGCCCT CGATTTGGAG
  TAGGAAAGCA ACAGCCTACA AGTAACCAGG CAGCAAGAAG ATGCTGTACT TACATGGCTA
  TGTCCCCTTT CATTCCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137582664	ENSMUSSNP7057693	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47989462					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33190781 () rs orientation: forward

Symbol	Name	Function Class
F730043M19Rik	RIKEN cDNA F730043M19 gene	within coordinates
Gm16267	predicted gene 16267	1143 bp downstream
Rr256081	regulatory region 256081	181 bp distal
Rr256082	regulatory region 256082	820 bp proximal
Rr260246	regulatory region 260246	1181 bp distal
Rr263299	regulatory region 263299	1016 bp proximal