rs47989824 SNP Detail

Summary

• ID
  rs47989824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13438618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CAAAAGTTCG GAAAAAGGAT TGTCAGAAAT CCTGATTCTG TAATGATCAA
  Y
  GTCTAGTACA GTTTGGAGAC CTGGACAGAA TTCCTGACCG AGAGCCGCTG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52145409	NES15236884	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T	T	T	C
ss146822949	ENSMUSSNP3033941	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47989824					SNP	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52145409	NES15236884	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13438618 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Gm66583	predicted gene, 66583	740 bp upstream
Rr427807	regulatory region 427807	1361 bp proximal
Rr427808	regulatory region 427808	1854 bp proximal