rs47990016 SNP Detail

Summary

• ID
  rs47990016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156908633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC AGAACTTGCC ACTGTTAACA
  Y
  AGTGCTTTTC AGCCTAGCCC CTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145814234	ENSMUSSNP2341676	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320073538	CHEV_1_159011194	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47990016					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156908633 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm30568	predicted gene, 30568	within coordinates
Rr421335	regulatory region 421335	928 bp distal
Rr421336	regulatory region 421336	1510 bp distal
Rr421337	regulatory region 421337	329 bp proximal
Rr421338	regulatory region 421338	418 bp proximal
Rr421339	regulatory region 421339	540 bp proximal
Rr421340	regulatory region 421340	579 bp proximal
Rr421341	regulatory region 421341	1034 bp proximal
Rr421342	regulatory region 421342	1120 bp proximal
Rr421343	regulatory region 421343	1341 bp proximal
Rr421344	regulatory region 421344	1791 bp proximal