rs47990506 SNP Detail

Summary

• ID
  rs47990506
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76555942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGCATCA AGGCTGAACT
  GATGATACGT TGCTCCAGGC CCAGAGGAAC AGGGAGACCC AGCAGAGAGA CTCCCCAAAG
  GGCCATAGAA GCTCTGTGGA TGATGGCCAT GTGGTAGGAA AACCATCCTA GACCTGACCT
  TCTGTAGGAA CCAACACCGA GTGTCTCCCT CAGTGTTCAA ATTTGTGCCA CGTGAGTCAC
  R
  CCCAAGAGTC CCAGTTTCAT TCCCAACTCC ACCGGGAATG TCAAACAGAT GCTGAGCTGA
  CACTTAAGTC TGCAGGCAAC CTTCTGGACC ACAAGGAGCA GGCTTTTGCA ACCCCAGTTC
  CCATACCCCA AACCCACATG AAGCCTGGAC TTTCTCCCTG GATAAGGGCA ACTGACAGCC
  AGTGTTGCAT GTACCAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61288923	NES16903907	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47990506					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288923	NES16903907	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76555942 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Tssr94199	transcription start site region 94199	1728 bp upstream
Tssr94200	transcription start site region 94200	1804 bp upstream
Tssr98202	transcription start site region 98202	941 bp upstream
Tssr98203	transcription start site region 98203	1348 bp downstream
Tssr98204	transcription start site region 98204	1858 bp downstream