rs47990529 SNP Detail

Summary

• ID
  rs47990529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117840926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGACACCT CCTCCCGTCC
  TGCAGCTGGC CTCCATCACC GAGCATCCTG GTTTTCTTGA GCCCTGTCTC TAAAGGAATA
  CCATTCCCAT TTCCATACCT CCCCTTCTTA CAGCTTGCCC CCACTGCTGT TTTTCTTTCA
  AGAGCTAATA AAACGGTCCT TGAGCTCCCT TCTGGGTCTG TTTTTAAAGC CTTTTATTAA
  Y
  GAGACTAAGA ACCCCAAAGG GAACGCAATG TTCCCGGTAG CAACGTTGAA AACAGCACTG
  CCTTATATTG TATCATGGAG CTAATGTTAG GCAAGATACC CTCTGCAGCT TCCGGCTCCG
  TGTGGCACCT GGGTCCTGGA CCGGAAGGCT GCAAATCAGT GGTCAGGAGC TCTTCGGGCT
  GGTCCATGTA TCCTGTCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss52224736	NES15323643	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs47990529					SNP	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52224736	NES15323643	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117840926 () rs orientation: forward

Symbol	Name	Function Class
Gm37852	predicted gene, 37852	within coordinates
Gm67360	predicted gene, 67360	31 bp downstream
Rr226004	regulatory region 226004	within coordinates
Rr385361	regulatory region 385361	390 bp upstream