rs47991654 SNP Detail

Summary

• ID
  rs47991654
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:67015903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTGGCCA GCAAAACCTA
  GTCTATTTAC TGGACTGTCT TTCACAGTAA CCCTACTCTG AAGTATGCAT AAAAGCTGTA
  GTGTGCATCT GCCCTGTCTA GCCAGGATCC CAGGTAGGAC AGGACAGCTC AGTTCAGTGA
  GGGCAGGACC TGCTGTGATC TAGTTAGAGC CAGTGGATCA CTTGCTAGAT GAAAGGAGAG
  R
  AGTAGGCCTT CTGGGCAGTG AGGCTAGCCT ATGCAAAGAG AGAACACTGC AGTGTGAGCT
  AGTGATGCTT TGGGGGCCTC TTGGAGACAC TATGGGGCCA CAGGGGACTA AGTAAGTTTA
  TGGCAGGAGA TACTTGGTGC CCTTGAGAAA CTCATAGGCT CTCAAGCTGC TAGAAATAGG
  CCACTTGAGA ATGGTTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss63541966	NES17020707	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	G	A	A	A		A	A		G
ss325004491	CHEV_15_66975616	CHEVERUD	SCREENING_POP	f	SNP											A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47991654					SNP	A	A	A	G	A	G	G	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63541966	NES17020707	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:67015903 () rs orientation: forward

Symbol	Name	Function Class
Gm63615	predicted gene, 63615	within coordinates
Rr1092	regulatory region 1092	421 bp distal
Rr404420	regulatory region 404420	1343 bp upstream
St3gal1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	within coordinates