rs47992379 SNP Detail

Summary

• ID
  rs47992379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48653727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCAAGAT CTTGCACAAG
  GTCCCCTCCG GCTGGCTGCT GGCAAAGGAA AGGTGCCATG GGACCTCTCC ACCAGTTTCT
  CCTGCTGCTG ATCACAGGTG GGACCACAGG AGGGACCTAC CTTCAGCAAC ACTGTCTTTT
  CCTCACCTTC CTTGAGCAGA TGGCTGGGGT GTGGGGGCAG GGTGGCATGG AGGGGGAACT
  R
  TTATGGAGGC TGGAGTCCTG GTACACTCCA GTGTCCTGCT TTGACTCTGC TTTTCTCCCC
  CACTGGCTCA TTCGTGTTCT TCACACATCC TCCCCGAGAT TAATATCCAC CTATAGGAAG
  GGTAACAGGG GCAGCTGGAA TTAGTCACTG AAGGAGCTGT GAGGGTGGCA CTAGTTGTGA
  GGTAGGGGAC TCGTTAAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145714968	ENSMUSSNP6534510	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss325408101	CHEV_17_48486024	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47992379					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48653727 () rs orientation: forward

Symbol	Name	Function Class
Gm65373	predicted gene, 65373	1480 bp downstream
Rr335233	regulatory region 335233	527 bp distal
Rr335234	regulatory region 335234	within coordinates
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	282 bp downstream
Tssr145094	transcription start site region 145094	254 bp downstream
Tssr145095	transcription start site region 145095	206 bp downstream
Tssr145096	transcription start site region 145096	173 bp downstream
Tssr145097	transcription start site region 145097	802 bp upstream
Tssr145098	transcription start site region 145098	1129 bp upstream
Tssr145099	transcription start site region 145099	1781 bp upstream
Tssr145100	transcription start site region 145100	1810 bp upstream
Tssr145101	transcription start site region 145101	1847 bp upstream
Tssr145102	transcription start site region 145102	1946 bp upstream
Tssr148525	transcription start site region 148525	1991 bp downstream