rs47992493 SNP Detail

Summary

• ID
  rs47992493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25671689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC TATCTCTTAG GAGGACAATG
  Y
  CACCGGACTT GGGGCCACTC AGATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145389305	ENSMUSSNP4296506	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325337972	CHEV_17_25589660	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47992493					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25671689 () rs orientation: forward

Symbol	Name	Function Class
Gm63608	predicted gene, 63608	within coordinates
Rr523576	regulatory region 523576	679 bp distal
Tekt4	tektin 4	1826 bp upstream
Tssr143159	transcription start site region 143159	1004 bp upstream
Tssr143160	transcription start site region 143160	1812 bp upstream