rs47992714 SNP Detail

Summary

• ID
  rs47992714
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104694378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGTCTGTA GGAGGAGCCA ATGGGAAGTA GCCATTAAGA
  GCAGGGGACT CTTTATTTTT TTTTTTTAAT TTATTTTTAG TTTCATGTGC ATTGGTGTTT
  K
  GCCTGCGCAT GTGTCTGTAT GAGGGTGTTG GAACTGAAAC TCCCTGGAAC TGGAGTTATA
  GACAGTTGTG TGCTGCCATG TGGGTGCTGG GAATTGAACC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60431864	NES15936358	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	T	T	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47992714					SNP	G	G	G	T	T	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431864	NES15936358	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104694378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	1482 bp proximal
Gm66976	predicted gene, 66976	1247 bp downstream
Ppm1j	protein phosphatase 1J	1044 bp downstream
Rhoc	ras homolog family member C	1972 bp upstream
Rr77009	regulatory region 77009	1222 bp proximal
Rr375521	regulatory region 375521	1803 bp downstream
Tssr31056	transcription start site region 31056	1510 bp upstream
Tssr31057	transcription start site region 31057	1731 bp upstream
Tssr31058	transcription start site region 31058	1780 bp upstream
Tssr31059	transcription start site region 31059	1964 bp upstream