rs47993850 SNP Detail

Summary

• ID
  rs47993850
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55253297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTTCGC CTCCACGGAT
  CGAGGCAAAC CGTTGGCACC ATGGATGATG AGAGTGATGA GAGTTGTCTC AGGGATGCGC
  TCACTCTGAC ACAGCGGTAT CGTATGTCAG ATGAGAGGGA GGGTCAGACG CTGCAGGTTG
  GCTGGTTCCG GACAGGAGGC TAACCCCAAA TTACTCTTCA GAATGAGCTT TGTAGGGAGA
  S
  TCTCGTGACC ATGGCGGGCG GTGACCCGGC CTTAAGGTGG GACAATGTTC CGAGCAGAGC
  TAGCGTCACA TGTACAATGT GGCTGGGGCA AAGGCAGCCG TAAAGTTTGG CGATGAAATC
  TCCGGTCTTT TCCAGTAAAT TGGGGGGGGT GTGGTGGGAG GAGACTGGCT GTGTGCCGAG
  GCTGCCTGCC CCTGTGCGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52722745	NES15566834	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47993850					SNP	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52722745	NES15566834	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55253297 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	within coordinates
Gm63347	predicted gene, 63347	39 bp upstream
Ngdn	neuroguidin, EIF4E binding protein	within coordinates
Rr369830	regulatory region 369830	646 bp downstream
Rr369831	regulatory region 369831	217 bp downstream
Rr404108	regulatory region 404108	1418 bp downstream
Rr492392	regulatory region 492392	376 bp distal
Rr492393	regulatory region 492393	673 bp distal
Rr492394	regulatory region 492394	50 bp distal
Rr492395	regulatory region 492395	within coordinates
Rr492396	regulatory region 492396	318 bp proximal
Tssr125743	transcription start site region 125743	269 bp downstream