rs47994491 SNP Detail

Summary

• ID
  rs47994491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78944553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTGATG AGAGCCCTGT
  TCAAACCTCT TCAATGTGTA AAAGCAAAGC AATGATGGGA AAAGGAACCA ACTCAGAACC
  GTGTGCACTG AGGACTCCGC ATGGCCTTTC TCTAGGCATC TTTTCACCAA GGACCCTGAG
  CGCTGGCCGC TCCGAGTCGC CCTGTGACTG CTGTTTACCT CTAGACCTGA GCACAAAGCT
  Y
  GAGGGCTGAA GGTGGCAGCA GGGCTGAGGA CCCGGCGCTT CCTTCCCAGG CTGGTGGCAG
  GTGAGTGTGG TCCGGAGCTA AGTGAGGGAG GCCAGGCAAT TCCAACCTCA TCTGATGGCT
  TCTGGCCACA GCAAGTGTTA GGTGGTGATG GGCAACAGGG GAGTTGAGGA GGGGAAGCAG
  CACCCCTTGA TAAAGGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60756716	NES16398614	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47994491					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60756716	NES16398614	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78944553 () rs orientation: forward

Symbol	Name	Function Class
Gm5830	predicted pseudogene 5830	801 bp downstream
Gm29536	predicted gene 29536	within coordinates
Gm69923	predicted gene, 69923	within coordinates
Tssr12431	transcription start site region 12431	1248 bp downstream