rs47995383 SNP Detail

Summary

• ID
  rs47995383
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135764646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCTTACAT TATTTTATTT ATGAGTAGAG
  TAGCCTAGAG CATTGCTGGG CCATTAAATA CAACAGAACC CTAACCAGTT GGATTTCTCA
  GATTTAGGTT AAGGACTACC CAATCCTTTC TTCTAGAGGC CCAGAGAGCA GGGTAAGACC
  R
  TAGCTATATT AGCTATAGGG GTCTAGCTCT CATGTCCAGG AACAAAGATG CTATCCTAGA
  AGCACTGAGA GAGGAGAAAT GTTCAGAGGC AGGTGGGGCT CCTCCAAGGA GATGTCCCAT
  CTCCGCTGGG CTTCTGGGAG CAGGTGGGAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319993829	CHEV_1_137733485	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47995383					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135764646 () rs orientation: forward

Symbol	Name	Function Class
Rr419294	regulatory region 419294	485 bp distal
Rr419295	regulatory region 419295	176 bp distal
Rr419296	regulatory region 419296	within coordinates
Rr419297	regulatory region 419297	841 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	512 bp downstream
Tssr9006	transcription start site region 9006	1502 bp upstream
Tssr9007	transcription start site region 9007	1999 bp upstream